IMT Atlantique offers several resources to support student mental health and well-being. Students can access confidential counseling services provided by professional psychologists, who assist with stress, anxiety, and other mental health issues. The university also organizes workshops on stress management, mindfulness, and emotional resilience. Furthermore, student organizations like the Bureau des Étudiants (BDE) create a supportive environment through social events and peer support networks, encouraging students to maintain a balanced lifestyle during their academic journey.

Student dormitories at IMT Atlantique are secure with restricted access to ensure only authorized residents can enter the premises. Campus residences are equipped with keycard access systems and are monitored by security personnel. In addition to regular security patrols, students living in on-campus housing are given safety guidelines for emergencies. Each dormitory has fire alarms and evacuation protocols to ensure that students are well-prepared in case of an emergency.